PATHWAYS TO FUNCTION VIA THE EMERGENCE OF A MECHANICAL SWITCH IN EVOLVABLE MATTER

dc.contributor.advisorSidney, Nagel
dc.contributor.authorAlqatari, Samar
dc.date.accessioned2026-03-04T14:22:27Z
dc.date.issued2025
dc.description.abstractThe underlying principles of how sharp switches occur in rugged fitness landscapes, while integral for understanding evolution of function and adaptation in biological systems, re- main elusive. Here I use elastic mechanical networks as a platform for probing the physical principles governing single-mutation transitions between two highly-fit, incompatible func- tions. The function used is an allosteric coupling of two pairs of source and target nodes that respond to an input strain in-phase or out-phase with each other. I study the complete fitness landscapes for ensembles of networks, and find that high-fitness pathways between these functions nearly always exist. At the largest fitness threshold for viable evolution, the functional transitions occur via a “jumper” mutation: a single bond addition or deletion that connects distinct fitness peaks with opposite functions. These mutations can be viewed as a mechanical switch, which I find can switch between incompatible functions with minimal perturbation to the system. In some cases, the mere presence of a bond, regardless of stiff- ness, constrains the deformation mode and determines function. However, bond formation or breaking is not always necessary: subtle geometric deformations that conserve connectivity can be sufficient to induce sharp functional transitions. The study of this physical system suggests that the single mutation function switches often found in biological systems may be fundamentally mechanical in origin.
dc.format.extent38
dc.identifier.urihttps://hdl.handle.net/20.500.14154/78373
dc.language.isoen_US
dc.publisherSaudi Digital Library
dc.subjectfunction switch
dc.subjectmechanical network
dc.subjectmutation
dc.titlePATHWAYS TO FUNCTION VIA THE EMERGENCE OF A MECHANICAL SWITCH IN EVOLVABLE MATTER
dc.typeThesis
sdl.degree.departmentPhysics
sdl.degree.disciplinePhysics
sdl.degree.grantorUniversity of Chicago
sdl.degree.nameDoctor of Philosophy

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